数据集
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"Kit version" 记录的是运行 SAW count 分析流程时所使用的 --kit-version 参数信息。
Stereo-seq T Fresh Frozen (FF)
| Dataset | Chip size | Kit version | Pipeline version | Species | Disease state | Anatomical tissue | Staining method |
|---|---|---|---|---|---|---|---|
| SS200000135TL_D1_mouse_brain_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.2 | ≥ SAW 5.5 | Mouse | Healthy | Brain | ssDNA |
| FP200009107_E414_mouse_olfactory_bulb_Stereo-seq_T_FF | 0.5 cm x 0.5 cm | Stereo-seq T FF V1.2 | ≥ SAW 6.1 | Mouse | Healthy | Olfactory bulb | DAPI |
| B01207E3G4_rat_brain_Stereo-seq_T_FF | 2 cm x 3 cm | Stereo-seq T FF V1.2 | ≥ SAW 6.1 | Rat | Healthy | Brain | ssDNA |
| C02533C1_mouse_kidney_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.2 | ≥ SAW 7.0 | Mouse | Healthy | Kidney | H&E |
| C04042E2_mouse_brain_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Brain | ssDNA |
| C04042E3_mouse_brain_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Brain | H&E |
| B04372C214_mouse_tongue_Stereo-seq_T_FF | 0.5 cm x 0.5 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Tongue | H&E |
| C04687E314_mouse_eyeball_Stereo-seq_T_FF | 0.5 cm x 0.5 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Eyeball | H&E |
| B04372C211_FF1.3_mouse_ovary_Stereo-seq_T_FF | 0.5 cm x 0.5 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Ovary | H&E |
| C03937C4_mouse_brain_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Brain | DAPI + 2 IF ( NeuN, SMI32) |
| B04652F6_mouse_testis_Stereo-seq_T_FF | 1 cm x 1 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Testis | DAPI + 1 IF ( TESK2) |
| D05103C4D4_mouse_embyro_Stereo-seq_T_FF | 1 cm x 2 cm | Stereo-seq T FF V1.3 | ≥ SAW 8.1 | Mouse | Healthy | Embryo | H&E |
Stereo-CITE T Fresh Frozen (FF)
| Dataset | Chip size | Kit version | Pipeline version | Species | Disease state | Anatomical tissue | Staining method |
|---|---|---|---|---|---|---|---|
| A02677B5_mouse_thymus_Stereo-CITE | 1 cm x 1 cm | Stereo-CITE T FF V1.0 | ≥ SAW 8.1 & SAW 7.1 | Mouse | Healthy | Thymus | DAPI |
| C04776D6_mouse_spleen_Stereo-CITE | 1 cm x 1 cm | Stereo-CITE T FF V1.1 | ≥ SAW 8.1 | Mouse | Healthy | Spleen | DAPI |
Stereo-seq N Formalin Fixed & Paraffin Embedded (FFPE)
| Dataset | Chip size | Kit version | Pipeline version | Species | Disease state | Anatomical tissue | Staining method |
|---|---|---|---|---|---|---|---|
| C04144D5_mouse_brain_Stereo-seq_N_FFPE | 1 cm x 1 cm | Stereo-seq N FFPE V1.0 | ≥ SAW 8.0 | Mouse | Healthy | Brain | ssDNA |
| C04138G3_mouse_brain_Stereo-seq_N_FFPE | 1 cm x 1 cm | Stereo-seq N FFPE V1.0 | ≥ SAW 8.0 | Mouse | Healthy | Brain | H&E |
| C04495G4_mouse_lung_microorganism_Stereo-seq_N_FFPE | 1 cm x 1 cm | Stereo-seq N FFPE V1.0 | ≥ SAW 8.0 | Mouse | Infected with Mycobacterium tuberculosis | Lung | H&E |
| C04496D6_mouse_brain_Stereo-seq_N_FFPE | 1 cm x 1 cm | Stereo-seq N FFPE V1.0 | ≥ SAW 8.0 | Mouse | Healthy | Brain | H&E |